JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKRD55_chr5_56094680_56238330	0/0	g0289	1	0	1	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0290	1	0	1	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0291	1	0	0	1	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0292	1	0	0	1	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0293	1	0	0	1	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0294	1	0	0	1	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0295	1	0	0	1	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0296	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0297	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0298	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0299	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0300	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0301	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0302	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0303	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0304	1	0	1	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0305	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0306	1	1	0	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	g0307	1	0	1	0	0	0	ANKRD55	chr5	56094680	56238330
ANKRD60_chr20_58211126_58233653	0/0	g0001	53	1	11	37	3	1	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0002	43	3	7	25	1	7	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/1	g0003	14	1	5	0	2	5	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0004	13	0	6	1	3	3	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0005	12	0	0	12	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0006	12	0	0	12	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0007	11	0	10	0	0	1	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0008	10	0	0	9	0	1	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0009	10	0	0	9	0	1	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0010	9	9	0	0	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0011	6	0	0	6	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0012	6	0	1	5	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0013	5	0	0	5	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0014	5	5	0	0	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0015	5	0	2	0	2	1	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0016	4	0	0	4	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0017	4	4	0	0	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0018	4	0	0	0	0	4	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0019	4	4	0	0	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0020	3	3	0	0	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0021	3	0	0	3	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0022	3	1	0	2	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0023	3	0	0	3	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0024	3	0	0	3	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0025	3	3	0	0	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0026	3	2	0	0	1	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0027	3	0	0	3	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0028	3	1	0	0	2	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0029	3	0	3	0	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0030	3	3	0	0	0	0	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	g0031	2	0	0	2	0	0	ANKRD60	chr20	58211126	58233653