JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKRD6_chr6_89428152_89638821	0/0	g0252	1	0	0	0	0	1	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0253	1	0	1	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0254	1	0	0	1	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0255	1	0	0	1	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0256	1	0	1	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0257	1	0	1	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0258	1	0	1	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0259	1	0	1	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0260	1	0	0	0	1	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0261	1	0	0	0	0	1	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0262	1	0	0	1	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0263	1	0	0	0	1	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0264	1	0	1	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0265	1	0	1	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0266	1	0	0	1	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0267	1	0	0	1	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0268	1	0	1	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0269	1	0	0	0	0	1	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	g0270	1	1	0	0	0	0	ANKRD6	chr6	89428152	89638821
ANKRD7_chr7_118219704_118247732	0/0	g0001	32	0	7	18	1	6	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0002	15	0	0	15	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0003	13	6	2	2	1	2	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0004	12	0	4	7	1	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0005	11	0	3	6	0	2	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0006	10	0	0	10	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0007	9	0	4	5	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0008	9	1	1	5	0	2	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0009	8	1	3	1	2	1	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0010	5	0	1	3	0	1	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0011	5	1	2	2	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0012	5	0	0	5	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0013	5	0	1	4	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0014	5	0	0	5	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0015	5	0	0	5	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0016	4	0	1	1	1	1	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0017	4	0	1	1	1	1	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0018	4	0	0	2	1	1	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0019	4	0	0	4	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0020	3	3	0	0	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0021	3	0	1	1	0	1	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0022	3	0	1	2	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/1	g0023	3	0	1	0	0	1	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0024	3	0	2	1	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0025	2	2	0	0	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0026	2	2	0	0	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0027	2	0	0	2	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0028	2	0	0	0	2	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0029	2	2	0	0	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0030	2	1	1	0	0	0	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	g0031	2	0	0	1	0	1	ANKRD7	chr7	118219704	118247732