JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANKS3_chr16_4691511_4739271	0/0	g0325	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0326	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0327	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0328	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0329	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0330	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0331	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0332	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0333	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0334	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0335	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0336	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0337	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0338	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0339	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0340	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0341	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0342	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0343	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0344	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0345	1	0	1	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0346	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0347	1	0	0	1	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0348	1	0	0	1	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0349	1	0	0	1	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0350	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0351	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0352	1	0	0	1	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0353	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0354	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	g0355	1	1	0	0	0	0	ANKS3	chr16	4691511	4739271
ANKS4B_chr16_21228699_21258850	0/0	g0001	29	0	4	23	1	1	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0002	23	0	8	13	0	2	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0003	22	0	6	9	3	4	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0004	12	0	0	12	0	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0005	10	9	1	0	0	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0006	9	3	2	2	0	2	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0007	9	0	6	0	1	2	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0008	7	0	0	6	0	1	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0009	7	0	0	6	0	1	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0010	6	0	0	6	0	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0011	6	0	5	0	1	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0012	6	0	0	5	0	1	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0013	6	6	0	0	0	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0014	5	0	0	5	0	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0015	5	4	1	0	0	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0016	5	0	0	5	0	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/1	g0017	5	0	1	0	1	2	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0018	4	0	4	0	0	0	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	g0019	4	0	0	4	0	0	ANKS4B	chr16	21228699	21258850