JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCF2_chr7_151206484_151232205	0/0	g0104	1	0	1	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0105	1	0	0	1	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0106	1	0	0	1	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0107	1	0	0	0	0	1	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0108	1	1	0	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0109	1	1	0	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0110	1	0	0	1	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0111	1	0	1	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0112	1	0	1	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0113	1	1	0	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0114	1	1	0	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0115	1	1	0	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0116	1	1	0	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0117	1	1	0	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0118	1	0	1	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0119	1	0	1	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0120	1	0	0	1	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0121	1	0	0	0	1	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0122	1	0	1	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0123	1	0	1	0	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0124	1	0	0	1	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0125	1	0	0	1	0	0	ABCF2	chr7	151206484	151232205
ABCF2_chr7_151206484_151232205	0/0	g0126	1	1	0	0	0	0	ABCF2	chr7	151206484	151232205
ABCF3_chr3_184181199_184199005	0/0	g0001	111	2	18	76	3	12	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0002	106	2	22	67	6	9	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0003	29	25	3	1	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0004	20	5	1	14	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	1/0	g0005	18	1	7	6	1	2	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0006	11	11	0	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/1	g0007	11	0	3	0	1	6	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0008	10	8	2	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0009	7	2	3	0	2	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0010	7	0	2	0	0	5	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0011	6	3	0	3	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0012	5	0	5	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0013	4	0	0	2	0	2	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0014	4	4	0	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0015	4	0	0	4	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0016	4	0	0	3	0	1	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0017	3	1	2	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0018	3	3	0	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0019	2	2	0	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0020	2	0	0	0	0	2	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0021	2	0	0	0	0	2	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0022	2	0	0	0	0	2	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0023	2	0	2	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0024	2	1	1	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0025	2	2	0	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0026	2	2	0	0	0	0	ABCF3	chr3	184181199	184199005
ABCF3_chr3_184181199_184199005	0/0	g0027	1	1	0	0	0	0	ABCF3	chr3	184181199	184199005