Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
A4GALT_chr22_42687121_42725870	0/0	g0365	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0366	1	0	0	0	1	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0367	1	0	0	0	0	1	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0368	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0369	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0370	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0371	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0372	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0373	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0374	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0375	1	0	0	0	0	1	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0376	1	0	0	0	1	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0377	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0378	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0379	1	0	0	1	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0380	1	0	0	1	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0381	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0382	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0383	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0384	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0385	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0386	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0387	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0388	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0389	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0390	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0391	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0392	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0393	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0394	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0395	1	1	0	0	0	0	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	g0396	1	0	1	0	0	0	A4GALT	chr22	42687121	42725870
A4GNT_chr3_138118713_138137390	0/0	g0001	49	0	7	30	3	9	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	1/0	g0002	38	4	6	22	1	4	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0003	18	1	9	6	1	1	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0004	10	0	1	7	0	2	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0005	8	0	0	8	0	0	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0006	8	0	3	4	0	1	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0007	7	1	1	5	0	0	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0008	7	1	1	5	0	0	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0009	6	0	0	6	0	0	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0010	6	2	2	0	0	2	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0011	6	0	1	5	0	0	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0012	5	0	1	3	0	1	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0013	4	4	0	0	0	0	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0014	4	0	0	3	0	1	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/1	g0015	4	1	0	1	0	1	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0016	4	4	0	0	0	0	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0017	3	3	0	0	0	0	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	g0018	3	3	0	0	0	0	A4GNT	chr3	138118713	138137390