JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANPEP_chr15_89779895_89819852	0/0	g0360	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0361	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0362	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0363	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0364	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0365	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0366	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0367	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0368	1	0	0	1	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0369	1	1	0	0	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0370	1	1	0	0	0	0	ANPEP	chr15	89779895	89819852
ANPEP_chr15_89779895_89819852	0/0	g0371	1	1	0	0	0	0	ANPEP	chr15	89779895	89819852
ANTKMT_chr16_716146_727590	0/1	g0001	246	36	48	114	7	40	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	1/0	g0002	96	22	26	35	7	5	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0003	24	16	1	6	0	1	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0004	9	9	0	0	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0005	9	9	0	0	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0006	1	0	0	1	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0007	1	1	0	0	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0008	1	1	0	0	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0009	1	1	0	0	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0010	1	0	1	0	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0011	1	1	0	0	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0012	1	0	0	1	0	0	ANTKMT	chr16	716146	727590
ANTKMT_chr16_716146_727590	0/0	g0013	1	0	0	1	0	0	ANTKMT	chr16	716146	727590
ANTXR1_chr2_69008179_69254327	0/0	g0001	2	0	0	2	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0002	1	0	1	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0003	1	0	1	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0004	1	0	0	0	0	1	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0005	1	0	0	0	1	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0006	1	0	0	1	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0007	1	1	0	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0008	1	1	0	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0009	1	0	0	0	1	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0010	1	0	0	0	0	1	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0011	1	0	0	1	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0012	1	0	0	1	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0013	1	0	1	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0014	1	0	0	0	0	1	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0015	1	1	0	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0016	1	0	1	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0017	1	0	0	0	0	1	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0018	1	0	0	1	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0019	1	0	0	1	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0020	1	0	0	1	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0021	1	0	0	1	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0022	1	0	1	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0023	1	1	0	0	0	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0024	1	0	0	0	1	0	ANTXR1	chr2	69008179	69254327
ANTXR1_chr2_69008179_69254327	0/0	g0025	1	0	0	1	0	0	ANTXR1	chr2	69008179	69254327