JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANXA4_chr2_69737134_69832112	0/0	g0328	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0329	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0330	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0331	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0332	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0333	1	0	0	0	0	1	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0334	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0335	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0336	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0337	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0338	1	0	0	1	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0339	1	1	0	0	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0340	1	1	0	0	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0341	1	1	0	0	0	0	ANXA4	chr2	69737134	69832112
ANXA4_chr2_69737134_69832112	0/0	g0342	1	1	0	0	0	0	ANXA4	chr2	69737134	69832112
ANXA5_chr4_121662946_121701980	0/0	g0001	22	0	2	15	1	4	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0002	16	16	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/1	g0003	16	1	3	9	2	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0004	11	0	1	9	0	1	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0005	8	0	2	6	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0006	7	0	6	1	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0007	6	1	2	2	1	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	1/0	g0008	6	5	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0009	5	5	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0010	5	0	3	0	0	2	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0011	5	0	0	5	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0012	5	1	2	2	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0013	4	3	1	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0014	4	3	1	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0015	4	0	0	4	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0016	3	3	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0017	3	0	2	0	1	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0018	3	0	2	0	1	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0019	3	2	0	1	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0020	3	0	2	1	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0021	3	0	0	3	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0022	2	2	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0023	2	2	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0024	2	0	2	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0025	2	2	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0026	2	2	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0027	2	2	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0028	2	0	0	2	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0029	2	0	0	2	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0030	2	2	0	0	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0031	2	0	0	0	1	1	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0032	2	0	0	2	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0033	2	0	0	2	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0034	2	0	0	2	0	0	ANXA5	chr4	121662946	121701980
ANXA5_chr4_121662946_121701980	0/0	g0035	2	0	2	0	0	0	ANXA5	chr4	121662946	121701980