JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ABCG2_chr4_88085269_88163639	0/0	g0317	1	1	0	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0318	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0319	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0320	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0321	1	1	0	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0322	1	0	1	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0323	1	0	1	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0324	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0325	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0326	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0327	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0328	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0329	1	0	1	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0330	1	0	1	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0331	1	1	0	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0332	1	1	0	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0333	1	1	0	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0334	1	0	1	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0335	1	0	0	0	0	1	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0336	1	0	0	0	0	1	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0337	1	0	0	0	0	1	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0338	1	0	0	0	0	1	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0339	1	1	0	0	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0340	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0341	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0342	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0343	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG2_chr4_88085269_88163639	0/0	g0344	1	0	0	1	0	0	ABCG2	chr4	88085269	88163639
ABCG4_chr11_119144052_119167653	0/0	g0001	95	4	14	66	2	9	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	1/0	g0002	44	1	17	17	5	3	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0003	29	4	3	18	1	3	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/1	g0004	22	6	5	5	2	3	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0005	11	1	8	0	2	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0006	8	7	1	0	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0007	7	6	1	0	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0008	7	0	0	7	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0009	6	6	0	0	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0010	5	5	0	0	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0011	5	5	0	0	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0012	5	0	0	5	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0013	5	0	2	0	1	2	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0014	4	0	0	4	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0015	4	0	0	4	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0016	4	0	0	4	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0017	4	4	0	0	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0018	3	0	0	3	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0019	3	0	2	0	0	1	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0020	3	3	0	0	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0021	3	3	0	0	0	0	ABCG4	chr11	119144052	119167653
ABCG4_chr11_119144052_119167653	0/0	g0022	3	0	0	3	0	0	ABCG4	chr11	119144052	119167653