JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ANXA8_chr10_47462993_47489115	0/0	g0179	1	0	0	1	0	0	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	g0180	1	0	0	1	0	0	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	g0181	1	1	0	0	0	0	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	g0182	1	1	0	0	0	0	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	g0183	1	1	0	0	0	0	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	g0184	1	1	0	0	0	0	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	g0185	1	1	0	0	0	0	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	g0186	1	0	1	0	0	0	ANXA8	chr10	47462993	47489115
ANXA8_chr10_47462993_47489115	0/0	g0187	1	1	0	0	0	0	ANXA8	chr10	47462993	47489115
ANXA9_chr1_150977292_151000634	0/0	g0001	67	6	9	40	1	11	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0002	25	8	3	11	0	3	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0003	19	0	2	17	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0004	18	0	7	1	5	5	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0005	16	0	8	5	0	3	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0006	12	1	11	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0007	10	0	5	2	1	2	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0008	10	6	4	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0009	10	0	0	10	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0010	9	0	2	7	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	1/0	g0011	9	8	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0012	6	0	1	0	1	4	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0013	5	5	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0014	5	1	0	3	0	1	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0015	5	0	0	3	0	2	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0016	4	0	0	4	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0017	3	0	0	3	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/1	g0018	3	0	1	0	1	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0019	3	3	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0020	3	3	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0021	3	3	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0022	3	0	2	1	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0023	3	0	0	3	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0024	3	0	0	3	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0025	3	3	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0026	3	0	0	3	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0027	2	2	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0028	2	0	2	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0029	2	0	0	2	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0030	2	1	0	0	1	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0031	2	2	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0032	2	2	0	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0033	2	0	0	0	0	2	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0034	2	1	1	0	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0035	2	0	1	1	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0036	2	0	1	0	1	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0037	2	0	0	2	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0038	2	0	0	2	0	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0039	2	0	0	1	1	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0040	2	0	1	0	1	0	ANXA9	chr1	150977292	151000634
ANXA9_chr1_150977292_151000634	0/0	g0041	1	1	0	0	0	0	ANXA9	chr1	150977292	151000634