JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AOC1_chr7_150847517_150866504	0/0	g0136	1	0	0	0	1	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0137	1	0	0	0	0	1	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0138	1	0	1	0	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0139	1	1	0	0	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0140	1	0	1	0	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0141	1	0	0	0	0	1	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0142	1	0	0	1	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0143	1	0	0	1	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/1	g0144	1	0	0	0	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0145	1	1	0	0	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0146	1	0	0	1	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0147	1	0	0	0	0	1	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0148	1	0	0	0	0	1	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0149	1	0	0	0	1	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0150	1	0	0	0	1	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0151	1	0	0	0	0	1	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0152	1	0	1	0	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0153	1	0	0	1	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0154	1	0	0	1	0	0	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0155	1	0	0	0	0	1	AOC1	chr7	150847517	150866504
AOC1_chr7_150847517_150866504	0/0	g0156	1	1	0	0	0	0	AOC1	chr7	150847517	150866504
AOC2_chr17_42839580_42855707	1/0	g0001	123	15	37	43	8	19	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/1	g0002	30	10	8	5	0	6	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0003	17	10	5	0	0	2	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0004	10	0	0	6	0	4	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0005	9	2	1	5	0	1	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0006	6	3	1	2	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0007	6	0	6	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0008	5	0	5	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0009	4	4	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0010	4	4	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0011	3	3	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0012	3	3	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0013	3	0	0	3	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0014	2	0	1	0	0	1	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0015	2	2	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0016	2	0	1	0	0	1	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0017	2	0	0	2	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0018	2	2	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0019	2	0	1	0	0	1	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0020	2	1	0	0	0	1	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0021	2	0	1	1	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0022	2	1	0	1	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0023	2	0	1	0	0	1	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0024	2	1	0	1	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0025	2	2	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0026	1	1	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0027	1	0	1	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0028	1	1	0	0	0	0	AOC2	chr17	42839580	42855707
AOC2_chr17_42839580_42855707	0/0	g0029	1	0	1	0	0	0	AOC2	chr17	42839580	42855707