JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AP1G2_chr14_23554567_23572791	0/0	g0078	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0079	1	0	1	0	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0080	1	0	0	0	0	1	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0081	1	1	0	0	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0082	1	1	0	0	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0083	1	1	0	0	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0084	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0085	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0086	1	1	0	0	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0087	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0088	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0089	1	0	0	0	0	1	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0090	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0091	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0092	1	1	0	0	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0093	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0094	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0095	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0096	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0097	1	0	1	0	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0098	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0099	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1G2_chr14_23554567_23572791	0/0	g0100	1	0	0	1	0	0	AP1G2	chr14	23554567	23572791
AP1M1_chr19_16192911_16250906	0/0	g0001	4	4	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0002	4	0	1	3	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0003	3	3	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0004	2	2	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0005	2	0	2	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0006	2	0	0	1	1	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0007	2	0	0	0	0	2	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0008	2	2	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0009	2	0	0	0	0	2	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0010	2	0	0	0	0	2	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0011	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0012	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0013	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0014	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0015	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0016	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0017	1	0	1	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0018	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0019	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0020	1	0	1	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0021	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0022	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0023	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0024	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0025	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0026	1	0	0	0	0	1	AP1M1	chr19	16192911	16250906
AP1M1_chr19_16192911_16250906	0/0	g0027	1	1	0	0	0	0	AP1M1	chr19	16192911	16250906