JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AP1M2_chr19_10567671_10592312	0/0	g0335	1	1	0	0	0	0	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	g0336	1	1	0	0	0	0	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	g0337	1	0	1	0	0	0	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	g0338	1	0	1	0	0	0	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	g0339	1	0	0	1	0	0	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	g0340	1	1	0	0	0	0	AP1M2	chr19	10567671	10592312
AP1M2_chr19_10567671_10592312	0/0	g0341	1	0	0	1	0	0	AP1M2	chr19	10567671	10592312
AP1S1_chr7_101149476_101166276	0/0	g0001	107	14	11	62	2	18	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0002	47	4	1	39	3	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0003	36	8	6	16	2	4	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0004	30	7	16	7	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/1	g0005	22	0	11	3	1	6	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	1/0	g0006	17	1	2	6	3	4	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0007	17	2	6	0	2	7	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0008	14	0	0	13	0	1	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0009	11	0	0	11	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0010	7	3	1	0	0	3	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0011	7	2	4	0	1	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0012	6	6	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0013	6	0	0	6	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0014	6	6	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0015	4	0	0	3	1	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0016	4	0	0	4	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0017	3	1	1	1	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0018	3	0	0	0	0	3	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0019	3	0	2	0	1	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0020	3	0	0	3	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0021	2	0	0	2	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0022	2	2	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0023	2	1	1	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0024	2	2	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0025	2	0	2	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0026	2	2	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0027	2	2	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0028	2	2	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0029	2	2	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0030	2	2	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0031	2	0	1	0	0	1	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0032	2	0	1	1	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0033	1	0	0	1	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0034	1	0	0	1	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0035	1	1	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0036	1	1	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0037	1	0	0	1	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0038	1	1	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0039	1	1	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0040	1	0	0	1	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0041	1	0	0	1	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0042	1	1	0	0	0	0	AP1S1	chr7	101149476	101166276
AP1S1_chr7_101149476_101166276	0/0	g0043	1	1	0	0	0	0	AP1S1	chr7	101149476	101166276