JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AP3M1_chr10_74115255_74155828	0/0	g0260	1	0	1	0	0	0	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	g0261	1	0	1	0	0	0	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	g0262	1	0	0	0	1	0	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	g0263	1	0	0	0	1	0	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	g0264	1	1	0	0	0	0	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	g0265	1	1	0	0	0	0	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	g0266	1	0	0	1	0	0	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	g0267	1	0	0	1	0	0	AP3M1	chr10	74115255	74155828
AP3M1_chr10_74115255_74155828	0/0	g0268	1	0	0	1	0	0	AP3M1	chr10	74115255	74155828
AP3M2_chr8_42148063_42176183	0/0	g0001	58	6	11	33	3	5	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0002	27	2	6	15	2	2	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0003	17	0	8	9	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	1/0	g0004	15	11	0	3	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0005	14	0	5	8	0	1	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0006	12	0	7	5	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0007	12	0	3	9	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0008	9	0	1	7	0	1	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/1	g0009	9	0	2	4	0	2	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0010	7	1	2	0	1	3	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0011	7	0	1	6	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0012	6	0	0	5	0	1	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0013	4	4	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0014	4	2	2	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0015	4	0	0	3	0	1	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0016	4	0	0	4	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0017	4	0	2	2	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0018	3	3	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0019	3	0	0	0	2	1	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0020	3	0	0	2	1	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0021	3	0	0	3	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0022	3	0	0	3	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0023	3	3	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0024	3	0	1	2	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0025	3	3	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0026	3	0	0	3	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0027	3	3	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0028	2	2	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0029	2	2	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0030	2	2	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0031	2	0	0	2	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0032	2	1	1	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0033	2	0	0	2	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0034	2	0	0	2	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0035	2	0	0	1	0	1	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0036	2	0	0	0	0	2	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0037	2	0	0	2	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0038	2	2	0	0	0	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0039	2	0	0	0	0	2	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0040	2	0	0	1	1	0	AP3M2	chr8	42148063	42176183
AP3M2_chr8_42148063_42176183	0/0	g0041	2	2	0	0	0	0	AP3M2	chr8	42148063	42176183