JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AP3S2_chr15_89825599_89898994	0/0	g0282	1	0	1	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0283	1	0	0	1	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0284	1	0	0	1	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0285	1	0	1	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0286	1	0	0	0	0	1	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0287	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0288	1	0	0	1	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0289	1	0	0	1	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0290	1	0	0	1	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0291	1	0	0	1	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0292	1	0	0	1	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0293	1	0	0	1	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0294	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0295	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0296	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0297	1	0	0	0	0	1	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0298	1	0	1	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0299	1	0	0	0	0	1	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0300	1	0	1	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0301	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0302	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0303	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0304	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0305	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0306	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0307	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0308	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0309	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0310	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0311	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP3S2_chr15_89825599_89898994	0/0	g0312	1	1	0	0	0	0	AP3S2	chr15	89825599	89898994
AP4B1_chr1_113889194_113909799	0/0	g0001	93	3	17	65	3	5	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	1/1	g0002	62	0	13	26	6	15	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0003	48	27	4	16	0	1	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0004	31	0	8	18	0	5	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0005	29	12	7	3	2	5	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0006	12	0	3	9	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0007	9	0	4	5	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0008	9	0	0	9	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0009	8	7	1	0	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0010	7	0	3	0	2	2	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0011	7	0	0	7	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0012	6	0	4	0	0	2	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0013	6	0	0	6	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0014	6	0	1	5	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0015	6	0	0	6	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0016	5	2	2	0	0	1	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0017	4	4	0	0	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0018	4	3	1	0	0	0	AP4B1	chr1	113889194	113909799
AP4B1_chr1_113889194_113909799	0/0	g0019	4	4	0	0	0	0	AP4B1	chr1	113889194	113909799