JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AP5M1_chr14_57263971_57303742	0/0	g0104	1	0	1	0	0	0	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	g0105	1	1	0	0	0	0	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	g0106	1	1	0	0	0	0	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	g0107	1	0	0	1	0	0	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	g0108	1	1	0	0	0	0	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	g0109	1	0	0	1	0	0	AP5M1	chr14	57263971	57303742
AP5M1_chr14_57263971_57303742	0/0	g0110	1	1	0	0	0	0	AP5M1	chr14	57263971	57303742
AP5S1_chr20_3815547_3833838	1/1	g0001	201	12	51	91	12	33	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0002	72	7	4	49	3	9	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0003	68	37	9	16	3	3	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0004	6	0	0	6	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0005	6	6	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0006	5	4	1	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0007	5	3	2	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0008	4	0	0	4	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0009	4	4	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0010	4	4	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0011	3	0	0	3	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0012	3	3	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0013	3	2	1	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0014	2	0	0	2	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0015	2	2	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0016	2	0	0	0	0	2	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0017	2	2	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0018	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0019	1	0	0	1	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0020	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0021	1	0	0	1	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0022	1	0	0	1	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0023	1	0	0	1	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0024	1	0	0	0	0	1	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0025	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0026	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0027	1	0	0	1	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0028	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0029	1	0	1	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0030	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0031	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0032	1	0	1	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0033	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0034	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0035	1	1	0	0	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0036	1	0	0	1	0	0	AP5S1	chr20	3815547	3833838
AP5S1_chr20_3815547_3833838	0/0	g0037	1	0	0	1	0	0	AP5S1	chr20	3815547	3833838
AP5Z1_chr7_4770623_4799397	1/0	g0001	61	4	17	26	3	10	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	g0002	13	0	0	13	0	0	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	g0003	9	0	0	6	0	3	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	g0004	8	8	0	0	0	0	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	g0005	6	0	2	1	0	3	AP5Z1	chr7	4770623	4799397
AP5Z1_chr7_4770623_4799397	0/0	g0006	6	0	0	4	0	2	AP5Z1	chr7	4770623	4799397