JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APMAP_chr20_24957925_24997751	0/0	g0153	1	0	0	1	0	0	APMAP	chr20	24957925	24997751
APOA1_chr11_116830751_116842622	0/0	g0001	124	34	23	57	2	8	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	1/0	g0002	123	12	16	76	1	17	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/1	g0003	97	11	29	35	9	12	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0004	45	27	7	6	3	2	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0005	29	0	3	19	1	6	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0006	13	0	0	13	0	0	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0007	8	6	2	0	0	0	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0008	2	0	0	0	2	0	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0009	1	1	0	0	0	0	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0010	1	0	0	0	0	1	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0011	1	1	0	0	0	0	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0012	1	0	0	0	0	1	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0013	1	0	0	0	0	1	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0014	1	0	0	1	0	0	APOA1	chr11	116830751	116842622
APOA1_chr11_116830751_116842622	0/0	g0015	1	0	0	1	0	0	APOA1	chr11	116830751	116842622
APOA2_chr1_161217292_161228628	0/1	g0001	154	35	24	73	2	19	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0002	89	11	20	53	2	3	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	1/0	g0003	67	23	17	10	6	10	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0004	65	1	4	49	2	9	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0005	11	3	0	6	1	1	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0006	10	9	0	0	0	1	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0007	9	0	5	1	1	2	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0008	7	0	3	2	1	1	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0009	6	4	0	2	0	0	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0010	4	2	1	0	0	1	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0011	4	0	0	4	0	0	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0012	1	0	0	0	1	0	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0013	1	1	0	0	0	0	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0014	1	0	0	0	0	1	APOA2	chr1	161217292	161228628
APOA2_chr1_161217292_161228628	0/0	g0015	1	1	0	0	0	0	APOA2	chr1	161217292	161228628
APOA4_chr11_116815700_116828304	0/1	g0001	112	6	29	57	4	15	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	1/0	g0002	109	3	16	69	2	18	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0003	42	17	4	21	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0004	42	4	3	34	0	1	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0005	35	32	3	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0006	17	0	0	17	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0007	15	4	6	2	1	2	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0008	14	0	3	6	3	2	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0009	13	0	7	0	2	4	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0010	9	4	2	3	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0011	8	7	1	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0012	7	0	0	0	4	3	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0013	5	0	4	0	1	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0014	4	4	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0015	3	3	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0016	3	3	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0017	2	0	0	2	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0018	2	2	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0019	1	1	0	0	0	0	APOA4	chr11	116815700	116828304