JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APOA4_chr11_116815700_116828304	0/0	g0020	1	0	0	1	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0021	1	0	0	0	0	1	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0022	1	1	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0023	1	1	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0024	1	1	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0025	1	0	0	1	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0026	1	0	0	0	0	1	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0027	1	0	0	1	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0028	1	0	1	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0029	1	0	0	0	1	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0030	1	1	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0031	1	1	0	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0032	1	0	0	0	0	1	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0033	1	0	0	1	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0034	1	0	1	0	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0035	1	0	0	1	0	0	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0036	1	0	0	0	0	1	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0037	1	0	0	0	0	1	APOA4	chr11	116815700	116828304
APOA4_chr11_116815700_116828304	0/0	g0038	1	1	0	0	0	0	APOA4	chr11	116815700	116828304
APOA5_chr11_116784367_116796879	0/1	g0001	194	15	43	97	9	29	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	1/0	g0002	89	1	7	72	2	6	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0003	54	10	3	40	0	1	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0004	31	7	12	0	6	6	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0005	22	11	11	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0006	18	17	1	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0007	10	7	1	1	0	1	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0008	9	6	3	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0009	8	0	0	7	0	1	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0010	7	7	0	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0011	5	4	1	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0012	5	4	1	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0013	4	4	0	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0014	4	0	0	4	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0015	3	0	0	0	0	3	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0016	2	0	0	2	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0017	2	0	0	2	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0018	1	0	0	0	0	1	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0019	1	0	0	1	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0020	1	1	0	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0021	1	0	0	1	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0022	1	0	0	0	1	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0023	1	0	1	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0024	1	1	0	0	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0025	1	0	0	1	0	0	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	g0026	1	1	0	0	0	0	APOA5	chr11	116784367	116796879
APOBEC1_chr12_7644400_7670908	0/0	g0001	5	0	0	5	0	0	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	g0002	4	3	1	0	0	0	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	g0003	2	0	2	0	0	0	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	g0004	2	0	0	1	0	1	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	g0005	2	0	0	1	0	1	APOBEC1	chr12	7644400	7670908