JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APOBEC2_chr6_41048202_41069891	0/0	g0097	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0098	1	0	1	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0099	1	0	1	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0100	1	0	0	1	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0101	1	0	0	1	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0102	1	0	0	1	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0103	1	0	0	1	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0104	1	0	0	1	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0105	1	0	0	1	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0106	1	0	0	0	0	1	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0107	1	0	0	1	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0108	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0109	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0110	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0111	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0112	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0113	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0114	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0115	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0116	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0117	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0118	1	0	0	0	1	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0119	1	0	1	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0120	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0121	1	1	0	0	0	0	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0122	1	0	0	0	0	1	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0123	1	0	0	0	0	1	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	g0124	1	0	0	1	0	0	APOBEC2	chr6	41048202	41069891
APOBEC3A_chr22_38952609_38968184	0/1	g0001	53	3	10	28	5	6	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0002	48	16	15	9	0	8	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0003	41	2	5	26	3	5	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0004	34	0	8	23	1	2	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0005	31	3	17	0	3	8	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0006	20	4	4	11	1	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0007	16	1	3	8	0	4	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0008	15	11	3	1	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0009	10	10	0	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0010	6	0	2	2	2	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0011	5	0	2	0	0	3	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0012	5	5	0	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0013	4	3	1	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0014	3	1	1	1	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0015	3	3	0	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0016	3	3	0	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0017	3	0	0	3	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0018	3	3	0	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0019	2	1	1	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0020	2	2	0	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0021	2	2	0	0	0	0	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	g0022	2	2	0	0	0	0	APOBEC3A	chr22	38952609	38968184