JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APOBEC3C_chr22_39009257_39025352	0/0	g0093	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0094	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0095	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0096	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0097	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0098	1	0	1	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0099	1	0	0	0	0	1	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0100	1	0	0	0	0	1	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0101	1	0	1	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0102	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0103	1	0	0	0	0	1	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0104	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0105	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0106	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0107	1	0	0	0	0	1	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0108	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0109	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0110	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0111	1	0	1	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0112	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0113	1	0	1	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0114	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0115	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0116	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0117	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0118	1	0	1	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0119	1	0	0	0	0	1	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0120	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0121	1	0	1	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0122	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0123	1	0	0	0	0	1	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0124	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0125	1	0	0	1	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	g0126	1	1	0	0	0	0	APOBEC3C	chr22	39009257	39025352
APOBEC3D_chr22_39016127_39038277	0/0	g0001	49	3	15	17	1	13	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0002	31	1	11	17	0	2	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0003	17	2	5	8	1	1	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0004	16	3	4	4	1	4	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0005	15	0	0	15	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	1/0	g0006	14	2	3	5	1	2	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0007	11	4	0	6	0	1	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0008	11	0	0	10	0	1	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0009	8	0	0	8	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0010	8	1	6	0	1	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/1	g0011	7	0	3	2	0	1	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0012	7	6	1	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0013	6	0	0	6	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0014	6	0	0	6	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0015	5	2	0	3	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0016	5	0	0	5	0	0	APOBEC3D	chr22	39016127	39038277