JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APOBEC3D_chr22_39016127_39038277	0/0	g0167	1	0	0	1	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0168	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0169	1	0	0	0	0	1	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0170	1	0	0	1	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0171	1	0	1	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0172	1	0	1	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0173	1	0	1	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0174	1	0	0	0	0	1	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0175	1	0	1	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0176	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0177	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0178	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0179	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0180	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0181	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0182	1	0	1	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0183	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0184	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0185	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0186	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	g0187	1	1	0	0	0	0	APOBEC3D	chr22	39016127	39038277
APOBEC3F_chr22_39035864_39060972	0/0	g0001	54	0	19	26	0	9	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0002	48	3	10	32	0	3	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0003	21	0	3	14	1	3	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0004	21	0	4	9	1	7	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0005	8	0	0	7	1	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/1	g0006	8	0	4	3	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0007	8	4	0	3	0	1	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0008	7	5	2	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0009	6	0	0	6	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0010	6	6	0	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0011	6	5	1	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0012	5	5	0	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0013	5	0	0	5	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0014	4	0	0	4	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0015	4	4	0	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0016	4	4	0	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0017	4	4	0	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0018	4	0	4	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0019	3	0	0	0	1	2	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0020	3	0	0	2	1	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0021	3	0	0	3	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0022	3	0	2	0	0	1	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0023	3	1	0	2	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0024	3	0	1	0	1	1	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0025	3	0	0	3	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0026	2	2	0	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0027	2	0	0	2	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0028	2	0	2	0	0	0	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	g0029	2	0	2	0	0	0	APOBEC3F	chr22	39035864	39060972