JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APOE_chr19_44900796_44914393	0/0	g0006	4	0	0	4	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0007	4	3	1	0	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0008	4	4	0	0	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0009	3	0	0	0	0	3	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0010	3	0	2	0	1	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0011	2	2	0	0	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0012	2	2	0	0	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0013	2	0	2	0	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0014	2	2	0	0	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0015	2	0	0	2	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0016	2	2	0	0	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0017	1	0	0	1	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0018	1	0	0	1	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0019	1	0	0	1	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0020	1	0	0	0	0	1	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0021	1	0	0	1	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0022	1	0	0	1	0	0	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	g0023	1	1	0	0	0	0	APOE	chr19	44900796	44914393
APOF_chr12_56355568_56367857	1/1	g0001	178	22	43	83	6	22	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0002	21	20	1	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0003	18	16	2	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0004	9	8	1	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0005	9	0	3	4	2	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0006	5	0	0	5	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0007	4	4	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0008	3	3	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0009	3	0	0	3	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0010	3	3	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0011	3	3	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0012	2	1	0	0	1	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0013	2	0	2	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0014	2	2	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0015	2	2	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0016	2	0	0	2	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0017	1	1	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0018	1	0	0	0	0	1	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0019	1	1	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0020	1	0	0	1	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0021	1	0	0	1	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0022	1	1	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0023	1	1	0	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0024	1	0	1	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0025	1	0	1	0	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0026	1	0	0	1	0	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0027	1	0	0	0	1	0	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	g0028	1	0	0	0	0	1	APOF	chr12	56355568	56367857
APOH_chr17_66207033_66234415	0/0	g0001	5	0	0	5	0	0	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	g0002	4	4	0	0	0	0	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	g0003	4	0	0	4	0	0	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	g0004	3	0	2	0	1	0	APOH	chr17	66207033	66234415