JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APOL5_chr22_35712872_35734483	0/0	g0101	1	0	1	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0102	1	0	0	1	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0103	1	0	0	1	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0104	1	0	0	1	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0105	1	0	0	1	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0106	1	0	0	1	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0107	1	0	0	1	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0108	1	0	0	0	0	1	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0109	1	0	0	0	1	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0110	1	0	0	0	0	1	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0111	1	0	1	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0112	1	0	1	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0113	1	0	1	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0114	1	0	1	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0115	1	0	0	1	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0116	1	0	0	0	0	1	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0117	1	1	0	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0118	1	1	0	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0119	1	1	0	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0120	1	0	0	1	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0121	1	1	0	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0122	1	1	0	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0123	1	1	0	0	0	0	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	g0124	1	1	0	0	0	0	APOL5	chr22	35712872	35734483
APOL6_chr22_35643446_35673404	0/0	g0001	62	2	8	41	2	9	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0002	43	2	10	24	1	6	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0003	18	1	5	6	4	2	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0004	16	1	8	2	2	3	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0005	15	2	10	3	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0006	12	10	2	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0007	11	0	0	11	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0008	10	8	1	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0009	8	0	0	8	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0010	8	0	6	2	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0011	7	0	1	5	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/1	g0012	7	2	2	0	0	2	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0013	5	0	0	5	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0014	5	5	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0015	5	0	0	5	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0016	5	3	2	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0017	4	0	0	4	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0018	4	4	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0019	4	4	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0020	3	2	1	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0021	3	0	0	3	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0022	3	0	0	2	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0023	3	3	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0024	3	0	0	3	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0025	3	0	2	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0026	3	0	1	0	1	1	APOL6	chr22	35643446	35673404