JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APOL6_chr22_35643446_35673404	0/0	g0077	1	0	1	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0078	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	1/0	g0079	1	0	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0080	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0081	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0082	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0083	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0084	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0085	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0086	1	0	1	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0087	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0088	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0089	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0090	1	0	1	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0091	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0092	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0093	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0094	1	0	1	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0095	1	0	0	0	1	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0096	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0097	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0098	1	0	0	0	1	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0099	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0100	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0101	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0102	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0103	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0104	1	0	1	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0105	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0106	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0107	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0108	1	0	1	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0109	1	0	1	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0110	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0111	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0112	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0113	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0114	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0115	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0116	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0117	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0118	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0119	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0120	1	0	0	1	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0121	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0122	1	1	0	0	0	0	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	g0123	1	0	0	0	0	1	APOL6	chr22	35643446	35673404
APOLD1_chr12_12780659_12796466	1/1	g0001	218	63	34	97	7	15	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	g0002	129	12	27	65	5	20	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	g0003	72	20	5	34	4	9	APOLD1	chr12	12780659	12796466