JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APRT_chr16_88804339_88816928	0/0	g0058	1	0	0	1	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0059	1	0	0	1	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0060	1	0	0	1	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0061	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0062	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0063	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0064	1	0	1	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0065	1	0	0	1	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0066	1	0	0	1	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0067	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0068	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0069	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0070	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0071	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0072	1	0	0	1	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0073	1	0	0	1	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0074	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0075	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0076	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0077	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	g0078	1	1	0	0	0	0	APRT	chr16	88804339	88816928
APTX_chr9_32967616_33006628	0/0	g0001	24	3	4	14	1	2	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0002	16	0	2	10	1	3	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0003	14	1	1	12	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/1	g0004	9	1	2	0	0	5	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0005	8	0	2	3	0	3	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0006	8	1	4	0	3	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0007	7	7	0	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0008	7	1	2	3	0	1	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0009	6	0	3	2	0	1	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0010	5	5	0	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0011	5	5	0	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0012	4	0	0	4	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0013	4	0	0	4	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0014	4	1	0	2	0	1	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0015	4	0	0	3	0	1	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0016	3	1	0	2	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0017	3	0	2	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0018	3	0	0	3	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0019	3	0	0	3	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0020	3	0	2	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0021	2	0	2	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0022	2	0	1	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0023	2	0	0	2	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0024	2	0	0	0	0	2	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0025	2	0	0	2	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0026	2	1	0	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0027	2	0	0	2	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0028	2	2	0	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0029	2	0	2	0	0	0	APTX	chr9	32967616	33006628