JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
APTX_chr9_32967616_33006628	0/0	g0230	1	0	0	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0231	1	0	0	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0232	1	0	0	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0233	1	1	0	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0234	1	0	0	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0235	1	0	1	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0236	1	0	0	0	0	1	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0237	1	0	0	1	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0238	1	0	0	0	0	1	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0239	1	0	1	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0240	1	1	0	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0241	1	1	0	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0242	1	1	0	0	0	0	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	g0243	1	1	0	0	0	0	APTX	chr9	32967616	33006628
AQP10_chr1_154316093_154330325	0/1	g0001	125	5	30	70	3	16	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0002	78	28	11	27	3	9	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0003	56	6	6	36	4	4	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0004	46	10	8	19	1	8	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0005	15	3	7	2	3	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0006	11	9	2	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	1/0	g0007	9	0	0	8	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0008	8	8	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0009	6	0	6	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0010	5	5	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0011	4	4	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0012	3	0	0	1	0	2	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0013	3	3	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0014	3	3	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0015	2	0	2	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0016	2	2	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0017	1	0	0	1	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0018	1	1	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0019	1	0	1	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0020	1	0	0	0	0	1	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0021	1	1	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0022	1	0	0	1	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0023	1	0	0	0	0	1	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0024	1	1	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0025	1	0	0	0	0	1	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0026	1	1	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0027	1	0	0	0	0	1	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0028	1	0	0	0	0	1	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0029	1	0	0	1	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0030	1	0	0	1	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0031	1	0	0	1	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0032	1	0	1	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0033	1	1	0	0	0	0	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	g0034	1	1	0	0	0	0	AQP10	chr1	154316093	154330325
AQP11_chr11_77584953_77615356	0/0	g0001	22	0	7	8	3	4	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	g0002	13	2	1	10	0	0	AQP11	chr11	77584953	77615356