JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AQP1_chr7_30906853_30930516	0/0	g0184	1	0	0	1	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0185	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0186	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0187	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0188	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0189	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0190	1	0	1	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0191	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0192	1	0	0	1	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0193	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0194	1	0	0	1	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0195	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0196	1	0	1	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0197	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0198	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0199	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0200	1	0	1	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0201	1	0	1	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0202	1	0	0	0	0	1	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0203	1	0	0	0	0	1	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0204	1	0	0	1	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0205	1	1	0	0	0	0	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	g0206	1	0	0	1	0	0	AQP1	chr7	30906853	30930516
AQP2_chr12_49945737_49963878	0/1	g0001	96	12	16	57	0	10	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0002	92	14	11	50	1	16	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0003	90	8	27	43	4	8	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0004	30	3	3	22	0	2	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0005	27	1	10	6	7	3	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	1/0	g0006	26	23	2	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0007	7	0	0	7	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0008	5	0	0	5	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0009	5	5	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0010	4	0	1	0	3	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0011	4	4	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0012	4	4	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0013	4	4	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0014	3	3	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0015	3	0	0	0	0	3	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0016	3	0	3	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0017	3	1	2	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0018	3	0	2	1	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0019	3	0	0	3	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0020	2	0	0	2	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0021	2	0	2	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0022	2	2	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0023	2	2	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0024	2	2	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0025	2	2	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0026	2	0	0	2	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0027	2	2	0	0	0	0	AQP2	chr12	49945737	49963878