JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
AQP2_chr12_49945737_49963878	0/0	g0028	1	0	0	0	0	1	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0029	1	0	0	1	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0030	1	0	0	1	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0031	1	0	0	1	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0032	1	0	0	0	1	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0033	1	0	1	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0034	1	0	0	1	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0035	1	1	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0036	1	1	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0037	1	1	0	0	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0038	1	0	0	1	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0039	1	0	0	0	0	1	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0040	1	0	0	1	0	0	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	g0041	1	1	0	0	0	0	AQP2	chr12	49945737	49963878
AQP3_chr9_33436160_33452593	0/0	g0001	51	5	10	28	4	4	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	1/0	g0002	48	10	6	24	2	5	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/1	g0003	44	0	9	25	4	5	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0004	27	0	1	23	0	3	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0005	15	13	1	1	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0006	10	1	3	5	0	1	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0007	10	0	2	4	1	3	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0008	10	0	4	5	1	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0009	9	8	1	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0010	8	0	0	8	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0011	8	1	3	0	2	2	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0012	8	0	0	8	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0013	7	0	6	0	1	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0014	7	5	2	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0015	6	0	6	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0016	6	6	0	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0017	6	0	0	6	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0018	5	1	0	3	0	1	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0019	5	0	0	5	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0020	5	5	0	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0021	4	0	2	2	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0022	4	4	0	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0023	4	0	3	0	1	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0024	4	0	0	3	0	1	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0025	4	0	0	4	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0026	3	0	2	1	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0027	3	0	0	2	0	1	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0028	3	0	3	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0029	3	0	0	0	0	3	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0030	3	0	1	0	0	2	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0031	3	3	0	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0032	3	0	0	3	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0033	3	1	0	2	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0034	3	1	2	0	0	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0035	3	0	0	2	1	0	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	g0036	3	0	1	0	1	1	AQP3	chr9	33436160	33452593