JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARCN1_chr11_118567409_118608033	0/0	g0317	1	1	0	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0318	1	0	1	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0319	1	1	0	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0320	1	0	1	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0321	1	1	0	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0322	1	0	1	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0323	1	1	0	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0324	1	1	0	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0325	1	1	0	0	0	0	ARCN1	chr11	118567409	118608033
ARCN1_chr11_118567409_118608033	0/0	g0326	1	0	0	0	0	1	ARCN1	chr11	118567409	118608033
ARC_chr8_142606049_142619479	0/0	g0001	87	15	16	38	7	11	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/1	g0002	73	6	19	33	5	9	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0003	68	9	6	41	0	12	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0004	48	6	31	1	3	7	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0005	40	1	0	37	0	2	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0006	9	9	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0007	7	0	0	7	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0008	7	5	1	0	0	1	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0009	7	7	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0010	5	0	1	4	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0011	5	0	0	5	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0012	5	5	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0013	5	5	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0014	5	5	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0015	4	4	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0016	3	2	1	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0017	3	3	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0018	3	0	1	2	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0019	3	0	0	3	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0020	2	0	0	2	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0021	2	2	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0022	2	2	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0023	2	2	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0024	2	2	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0025	2	0	0	0	0	2	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0026	1	0	0	1	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0027	1	0	0	1	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0028	1	0	0	1	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0029	1	0	0	1	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0030	1	0	0	0	0	1	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0031	1	0	0	0	0	1	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0032	1	1	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0033	1	1	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0034	1	0	0	1	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0035	1	1	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0036	1	0	0	0	1	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0037	1	0	0	1	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0038	1	1	0	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0039	1	0	1	0	0	0	ARC	chr8	142606049	142619479
ARC_chr8_142606049_142619479	0/0	g0040	1	0	0	0	0	1	ARC	chr8	142606049	142619479