JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARF1_chr1_228077708_228104212	0/0	g0075	1	0	0	0	0	1	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0076	1	0	0	0	0	1	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0077	1	0	1	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0078	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0079	1	0	1	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0080	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0081	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0082	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0083	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0084	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0085	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0086	1	0	0	0	1	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0087	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0088	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0089	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0090	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0091	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0092	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0093	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0094	1	0	0	0	0	1	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0095	1	0	0	0	0	1	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0096	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0097	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0098	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0099	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0100	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0101	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0102	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0103	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0104	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0105	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0106	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0107	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0108	1	1	0	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0109	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0110	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0111	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0112	1	0	0	0	0	1	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0113	1	0	0	0	0	1	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0114	1	0	1	0	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0115	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF1_chr1_228077708_228104212	0/0	g0116	1	0	0	1	0	0	ARF1	chr1	228077708	228104212
ARF3_chr12_48930723_48962487	0/0	g0001	63	6	16	34	1	6	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	g0002	54	1	15	29	3	6	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	g0003	17	13	0	0	1	3	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	g0004	8	7	1	0	0	0	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	g0005	8	0	0	8	0	0	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	g0006	8	1	5	0	0	2	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	g0007	7	7	0	0	0	0	ARF3	chr12	48930723	48962487
ARF3_chr12_48930723_48962487	0/0	g0008	6	0	2	2	0	2	ARF3	chr12	48930723	48962487