JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARF4_chr3_57566363_57602344	0/0	g0234	1	0	1	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0235	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0236	1	0	0	0	0	1	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0237	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0238	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0239	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0240	1	0	1	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0241	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0242	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0243	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0244	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0245	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0246	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0247	1	0	0	1	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0248	1	1	0	0	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0249	1	0	0	1	0	0	ARF4	chr3	57566363	57602344
ARF4_chr3_57566363_57602344	0/0	g0250	1	0	0	1	0	0	ARF4	chr3	57566363	57602344
ARF5_chr7_127583411_127596700	0/0	g0001	159	19	20	102	5	13	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/1	g0002	88	32	16	28	3	8	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	1/0	g0003	70	6	30	17	4	12	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0004	42	19	5	13	0	5	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0005	9	5	0	4	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0006	7	6	1	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0007	3	0	0	1	0	2	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0008	2	2	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0009	2	2	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0010	2	0	0	0	2	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0011	2	0	2	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0012	1	0	0	1	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0013	1	0	0	1	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0014	1	0	1	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0015	1	1	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0016	1	1	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0017	1	0	0	1	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0018	1	1	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0019	1	0	0	1	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0020	1	1	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0021	1	1	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0022	1	1	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0023	1	0	1	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0024	1	0	0	1	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0025	1	1	0	0	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0026	1	0	0	1	0	0	ARF5	chr7	127583411	127596700
ARF5_chr7_127583411_127596700	0/0	g0027	1	0	0	1	0	0	ARF5	chr7	127583411	127596700
ARF6_chr14_49888082_49902054	1/1	g0001	344	90	70	136	12	34	ARF6	chr14	49888082	49902054
ARFGAP1_chr20_63267813_63294790	0/0	g0001	12	0	3	6	1	2	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0002	8	0	0	5	1	2	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0003	7	0	3	3	0	1	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0004	6	1	2	2	0	1	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0005	5	0	0	4	1	0	ARFGAP1	chr20	63267813	63294790