JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARFGAP1_chr20_63267813_63294790	0/0	g0206	1	1	0	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0207	1	1	0	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0208	1	1	0	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0209	1	0	1	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0210	1	0	1	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0211	1	0	1	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0212	1	1	0	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0213	1	0	0	1	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0214	1	0	0	1	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0215	1	1	0	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0216	1	0	1	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0217	1	0	1	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0218	1	0	1	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0219	1	0	0	0	1	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0220	1	0	1	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0221	1	0	0	0	1	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0222	1	0	1	0	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0223	1	0	0	0	0	1	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0224	1	0	0	1	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0225	1	0	0	0	0	1	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0226	1	0	0	0	0	1	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0227	1	0	0	0	0	1	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0228	1	0	0	1	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0229	1	0	0	1	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP1_chr20_63267813_63294790	0/0	g0230	1	0	0	1	0	0	ARFGAP1	chr20	63267813	63294790
ARFGAP2_chr11_47159301_47181879	0/1	g0001	45	0	6	35	0	3	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0002	28	1	9	11	0	7	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0003	22	0	5	17	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0004	17	16	1	0	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0005	11	0	2	7	0	2	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0006	10	1	6	2	0	1	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0007	10	0	0	3	3	4	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0008	8	0	6	0	0	2	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0009	8	0	0	8	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0010	7	2	3	0	0	2	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0011	6	0	0	6	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0012	5	0	1	3	0	1	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0013	4	0	0	4	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0014	4	0	0	4	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0015	4	0	2	0	0	2	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0016	3	0	2	0	1	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0017	3	0	2	0	0	1	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0018	3	3	0	0	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0019	3	3	0	0	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0020	3	0	0	3	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0021	3	0	2	0	0	1	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0022	3	0	0	3	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0023	3	1	1	1	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0024	3	3	0	0	0	0	ARFGAP2	chr11	47159301	47181879
ARFGAP2_chr11_47159301_47181879	0/0	g0025	3	0	0	0	0	3	ARFGAP2	chr11	47159301	47181879