JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARFIP1_chr4_152774954_152917357	0/0	g0319	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0320	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0321	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0322	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0323	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0324	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0325	1	0	0	0	0	1	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0326	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0327	1	0	0	0	0	1	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0328	1	0	0	0	0	1	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0329	1	0	0	1	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0330	1	0	0	1	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0331	1	0	0	0	0	1	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0332	1	0	0	1	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0333	1	0	0	1	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0334	1	0	0	0	0	1	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0335	1	0	0	1	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0336	1	0	0	0	0	1	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0337	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0338	1	0	0	0	0	1	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0339	1	0	0	1	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0340	1	0	0	1	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0341	1	0	1	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP1_chr4_152774954_152917357	0/0	g0342	1	1	0	0	0	0	ARFIP1	chr4	152774954	152917357
ARFIP2_chr11_6471519_6486331	1/0	g0001	182	16	32	107	3	23	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/1	g0002	60	4	14	29	8	4	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0003	40	9	15	6	5	5	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0004	15	0	4	6	0	5	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0005	14	6	0	5	0	3	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0006	12	6	3	2	1	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0007	11	10	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0008	9	9	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0009	8	7	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0010	6	5	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0011	5	0	0	3	0	2	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0012	5	5	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0013	2	2	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0014	2	2	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0015	2	0	0	2	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0016	2	1	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0017	2	0	0	0	0	2	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0018	2	1	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0019	2	1	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0020	2	0	2	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0021	2	0	0	2	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0022	2	1	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0023	1	1	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0024	1	1	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0025	1	0	0	1	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0026	1	0	0	0	0	1	ARFIP2	chr11	6471519	6486331