JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARFIP2_chr11_6471519_6486331	0/0	g0027	1	1	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0028	1	0	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0029	1	1	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0030	1	0	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0031	1	0	0	1	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0032	1	0	0	0	1	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0033	1	0	0	1	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0034	1	0	0	0	0	1	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0035	1	0	1	0	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0036	1	0	0	1	0	0	ARFIP2	chr11	6471519	6486331
ARFIP2_chr11_6471519_6486331	0/0	g0037	1	1	0	0	0	0	ARFIP2	chr11	6471519	6486331
ARFRP1_chr20_63693647_63712976	0/0	g0001	46	0	5	34	2	5	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0002	19	6	3	2	2	6	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0003	17	2	2	12	0	1	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0004	17	4	4	6	0	3	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0005	16	6	2	4	2	2	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0006	12	5	4	2	1	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0007	9	0	0	7	0	2	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0008	9	2	2	0	0	5	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0009	9	0	0	9	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0010	8	0	0	7	0	1	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0011	8	0	1	7	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0012	5	5	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0013	5	0	5	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0014	5	5	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0015	4	0	4	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0016	3	3	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0017	3	3	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0018	3	0	2	0	1	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0019	3	3	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0020	3	2	1	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0021	3	0	0	2	0	1	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/1	g0022	3	0	1	0	1	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0023	3	0	1	0	0	2	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0024	2	0	1	1	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0025	2	1	0	1	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0026	2	0	2	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0027	2	0	2	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0028	2	2	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0029	2	0	0	2	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0030	2	0	0	2	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0031	2	0	0	2	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0032	1	0	0	0	0	1	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0033	1	0	0	0	1	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0034	1	1	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0035	1	1	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0036	1	0	0	0	0	1	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0037	1	0	0	1	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0038	1	0	0	0	1	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0039	1	1	0	0	0	0	ARFRP1	chr20	63693647	63712976