JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARFRP1_chr20_63693647_63712976	0/0	g0090	1	0	0	1	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0091	1	0	0	1	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0092	1	1	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0093	1	0	0	1	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0094	1	0	0	1	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0095	1	1	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	1/0	g0096	1	0	0	0	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0097	1	0	0	1	0	0	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	g0098	1	0	0	0	0	1	ARFRP1	chr20	63693647	63712976
ARG1_chr6_131568226_131589329	0/0	g0001	93	4	16	52	3	18	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0002	55	9	14	24	3	5	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0003	40	0	3	36	0	1	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0004	15	0	0	15	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0005	15	0	0	11	2	2	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0006	10	0	0	9	0	1	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0007	9	2	4	0	2	1	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0008	8	0	5	2	0	1	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0009	7	0	0	7	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0010	7	7	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0011	6	5	0	1	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0012	5	4	1	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0013	5	5	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0014	5	5	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0015	4	0	0	4	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0016	4	0	1	0	0	3	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0017	4	1	2	0	0	1	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	1/0	g0018	4	0	2	0	1	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0019	4	0	0	4	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0020	4	4	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0021	4	0	0	4	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0022	3	1	2	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0023	3	0	0	3	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0024	3	3	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0025	3	0	0	3	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0026	3	0	0	3	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0027	3	3	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0028	3	1	2	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0029	3	3	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0030	3	3	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0031	2	0	2	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/1	g0032	2	0	0	0	0	1	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0033	2	0	2	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0034	2	1	0	1	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0035	2	1	0	1	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0036	2	0	1	0	1	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0037	2	2	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0038	2	0	0	0	0	2	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0039	2	2	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0040	2	2	0	0	0	0	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	g0041	2	0	0	2	0	0	ARG1	chr6	131568226	131589329