JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARHGAP19_chr10_97217179_97297637	0/0	g0231	1	1	0	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0232	1	0	0	1	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0233	1	0	0	1	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0234	1	0	0	0	0	1	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0235	1	1	0	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0236	1	1	0	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0237	1	1	0	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0238	1	1	0	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0239	1	0	1	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0240	1	1	0	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0241	1	1	0	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP19_chr10_97217179_97297637	0/0	g0242	1	1	0	0	0	0	ARHGAP19	chr10	97217179	97297637
ARHGAP1_chr11_46672080_46705619	0/0	g0001	35	7	7	12	4	5	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/1	g0002	24	0	4	17	1	1	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0003	10	10	0	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0004	9	0	9	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0005	8	8	0	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0006	8	0	5	2	0	1	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0007	7	1	2	0	0	4	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0008	6	2	2	1	1	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0009	5	0	0	5	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0010	5	0	0	5	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0011	5	0	1	2	0	2	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0012	4	3	1	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0013	4	0	3	0	1	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0014	4	0	4	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0015	4	0	0	4	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0016	3	0	0	3	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0017	3	0	0	2	0	1	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0018	3	0	3	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0019	3	0	0	1	0	2	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0020	3	1	2	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0021	3	0	0	3	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0022	3	3	0	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0023	3	0	0	3	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0024	3	3	0	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0025	2	0	0	2	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0026	2	0	0	2	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0027	2	2	0	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0028	2	2	0	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0029	2	2	0	0	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0030	2	0	0	2	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0031	2	0	0	2	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0032	2	0	0	2	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0033	2	0	0	1	0	1	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0034	2	0	1	0	1	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0035	2	0	0	2	0	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0036	2	0	0	0	0	2	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0037	2	0	1	0	1	0	ARHGAP1	chr11	46672080	46705619
ARHGAP1_chr11_46672080_46705619	0/0	g0038	2	0	0	2	0	0	ARHGAP1	chr11	46672080	46705619