JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARHGAP8_chr22_44747575_44867784	0/0	g0385	1	1	0	0	0	0	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	g0386	1	1	0	0	0	0	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	g0387	1	1	0	0	0	0	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	g0388	1	0	1	0	0	0	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	g0389	1	0	1	0	0	0	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	g0390	1	0	0	0	0	1	ARHGAP8	chr22	44747575	44867784
ARHGAP9_chr12_57467269_57484866	0/0	g0001	104	7	20	58	4	15	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0002	72	3	17	41	1	10	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0003	12	0	0	12	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0004	12	0	2	7	2	1	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0005	11	0	7	3	0	1	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0006	11	1	4	5	0	1	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0007	10	10	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0008	10	0	0	10	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0009	9	9	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0010	6	6	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0011	6	5	1	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0012	5	3	2	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0013	5	5	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0014	5	0	0	5	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0015	5	0	0	5	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0016	4	0	0	4	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0017	4	2	1	1	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0018	4	3	1	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0019	3	0	0	2	0	1	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0020	3	0	0	3	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0021	3	2	1	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0022	3	3	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0023	2	0	0	1	0	1	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0024	2	0	1	1	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0025	2	2	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0026	2	2	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0027	2	1	1	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0028	2	2	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0029	2	2	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0030	2	0	2	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0031	2	2	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0032	2	1	0	1	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0033	2	0	0	2	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0034	2	0	0	2	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0035	2	1	1	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0036	2	2	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0037	2	0	0	2	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0038	2	0	0	2	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0039	2	0	0	2	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0040	1	0	0	0	0	1	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0041	1	0	0	0	0	1	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0042	1	1	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0043	1	1	0	0	0	0	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	g0044	1	1	0	0	0	0	ARHGAP9	chr12	57467269	57484866