JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARHGEF19_chr1_16192854_16217652	0/0	g0091	1	1	0	0	0	0	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	g0092	1	1	0	0	0	0	ARHGEF19	chr1	16192854	16217652
ARHGEF19_chr1_16192854_16217652	0/0	g0093	1	1	0	0	0	0	ARHGEF19	chr1	16192854	16217652
ARHGEF1_chr19_41878184_41912452	0/0	g0001	12	0	0	10	0	2	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0002	10	1	3	6	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0003	9	0	2	2	1	4	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0004	8	0	3	4	1	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0005	4	1	1	0	1	1	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0006	4	0	4	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0007	3	0	0	2	0	1	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0008	3	3	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0009	3	1	0	2	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0010	2	0	0	1	0	1	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0011	2	1	1	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0012	2	2	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0013	2	2	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0014	2	0	0	2	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0015	2	0	1	0	1	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0016	2	0	2	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0017	2	2	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0018	2	0	0	2	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0019	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0020	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0021	1	0	1	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0022	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0023	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0024	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0025	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0026	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0027	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0028	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0029	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0030	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0031	1	0	1	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0032	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0033	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0034	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0035	1	0	1	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0036	1	0	0	1	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0037	1	0	0	1	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0038	1	0	0	0	0	1	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0039	1	0	0	1	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0040	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0041	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0042	1	1	0	0	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0043	1	0	0	1	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0044	1	0	0	1	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0045	1	0	0	1	0	0	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0046	1	0	0	0	0	1	ARHGEF1	chr19	41878184	41912452
ARHGEF1_chr19_41878184_41912452	0/0	g0047	1	0	0	1	0	0	ARHGEF1	chr19	41878184	41912452