JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARHGEF38_chr4_105547620_105685914	0/0	g0145	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0146	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0147	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0148	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0149	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0150	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0151	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0152	1	0	0	0	1	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0153	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0154	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0155	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0156	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0157	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0158	1	0	1	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0159	1	0	1	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/1	g0160	1	0	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0161	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0162	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0163	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0164	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0165	1	0	1	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0166	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0167	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0168	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0169	1	0	1	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0170	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0171	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0172	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0173	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0174	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0175	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0176	1	0	0	0	0	1	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0177	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0178	1	0	1	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0179	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0180	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0181	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0182	1	0	0	1	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0183	1	0	1	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0184	1	1	0	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF38_chr4_105547620_105685914	0/0	g0185	1	0	1	0	0	0	ARHGEF38	chr4	105547620	105685914
ARHGEF39_chr9_35654343_35670195	0/0	g0001	76	1	9	62	0	4	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	g0002	74	4	4	56	1	9	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	g0003	62	3	16	29	5	9	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/1	g0004	52	3	23	8	4	13	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	1/0	g0005	35	32	2	0	0	0	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	g0006	21	13	2	4	0	2	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	g0007	17	2	7	2	2	4	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	g0008	14	1	4	6	1	2	ARHGEF39	chr9	35654343	35670195
ARHGEF39_chr9_35654343_35670195	0/0	g0009	11	10	1	0	0	0	ARHGEF39	chr9	35654343	35670195