JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARK2N_chr18_46169034_46271992	0/0	g0303	1	0	0	0	0	1	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0304	1	0	0	1	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0305	1	0	0	1	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0306	1	0	0	1	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0307	1	0	0	1	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0308	1	0	0	1	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0309	1	0	0	0	0	1	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0310	1	0	0	0	0	1	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0311	1	0	1	0	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0312	1	0	1	0	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0313	1	0	0	0	0	1	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/1	g0314	1	0	0	0	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0315	1	0	0	0	0	1	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0316	1	0	1	0	0	0	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	g0317	1	0	0	1	0	0	ARK2N	chr18	46169034	46271992
ARL10_chr5_176360487_176386909	1/0	g0001	42	7	4	21	0	9	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0002	38	4	9	15	4	6	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0003	35	8	4	19	1	3	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0004	26	3	7	9	1	6	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/1	g0005	14	3	3	6	0	1	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0006	12	2	9	1	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0007	11	0	1	10	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0008	10	0	4	5	0	1	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0009	9	2	3	4	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0010	9	6	3	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0011	6	0	0	6	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0012	6	3	1	2	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0013	6	1	1	4	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0014	5	2	2	1	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0015	5	0	2	2	0	1	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0016	4	0	0	3	1	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0017	4	4	0	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0018	3	0	1	0	2	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0019	3	1	0	0	2	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0020	3	0	0	3	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0021	3	3	0	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0022	3	3	0	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0023	3	0	1	0	0	2	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0024	3	3	0	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0025	3	2	0	1	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0026	3	0	0	3	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0027	3	0	0	3	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0028	3	0	0	1	0	2	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0029	3	1	1	1	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0030	3	0	0	3	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0031	3	2	1	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0032	2	0	0	2	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0033	2	0	0	2	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0034	2	1	1	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0035	2	1	1	0	0	0	ARL10	chr5	176360487	176386909