JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARL10_chr5_176360487_176386909	0/0	g0136	1	1	0	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0137	1	1	0	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0138	1	1	0	0	0	0	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	g0139	1	0	1	0	0	0	ARL10	chr5	176360487	176386909
ARL11_chr13_49623507_49638872	0/1	g0001	202	9	41	119	8	24	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0002	70	25	4	29	1	11	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0003	64	32	3	23	2	4	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0004	27	7	9	10	0	1	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0005	25	6	5	5	3	6	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0006	18	0	0	18	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	1/0	g0007	14	0	10	0	2	1	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0008	6	5	1	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0009	6	0	0	6	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0010	4	4	0	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0011	4	1	3	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0012	2	0	0	2	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0013	2	0	2	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0014	2	0	2	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0015	2	2	0	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0016	1	1	0	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0017	1	0	0	1	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0018	1	0	0	1	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0019	1	1	0	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0020	1	0	0	0	0	1	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0021	1	1	0	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0022	1	1	0	0	0	0	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	g0023	1	1	0	0	0	0	ARL11	chr13	49623507	49638872
ARL13A_chrX_100964708_100995831	0/0	g0001	10	0	2	7	0	1	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0002	5	0	0	5	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0003	5	1	3	0	0	1	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0004	4	0	1	3	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0005	4	0	4	0	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0006	4	0	0	3	0	1	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0007	3	0	0	3	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0008	3	0	0	3	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0009	3	0	0	3	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0010	3	0	0	3	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0011	3	0	1	0	0	2	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0012	3	0	2	1	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0013	3	3	0	0	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0014	2	1	1	0	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0015	2	0	0	2	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0016	2	0	0	2	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0017	2	2	0	0	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0018	2	0	0	2	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0019	2	0	0	2	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0020	2	0	1	1	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0021	2	0	1	1	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0022	2	0	1	1	0	0	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	g0023	2	2	0	0	0	0	ARL13A	chrX	100964708	100995831