JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARL15_chr5_53878942_54315573	0/0	g0201	1	0	1	0	0	0	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	g0202	1	0	1	0	0	0	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	g0203	1	1	0	0	0	0	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	g0204	1	1	0	0	0	0	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	g0205	1	0	1	0	0	0	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	g0206	1	1	0	0	0	0	ARL15	chr5	53878942	54315573
ARL16_chr17_81676187_81688797	1/0	g0001	248	57	54	92	10	34	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0002	70	3	2	62	1	2	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0003	32	0	4	25	0	3	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/1	g0004	27	10	7	0	4	5	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0005	27	0	9	18	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0006	12	12	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0007	4	0	2	2	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0008	3	0	0	3	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0009	2	0	0	2	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0010	2	2	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0011	2	2	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0012	1	1	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0013	1	0	0	0	1	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0014	1	0	0	0	0	1	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0015	1	1	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0016	1	0	1	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0017	1	1	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0018	1	0	0	0	0	1	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0019	1	1	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0020	1	1	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0021	1	0	0	1	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0022	1	0	0	1	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0023	1	0	1	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0024	1	1	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0025	1	1	0	0	0	0	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	g0026	1	1	0	0	0	0	ARL16	chr17	81676187	81688797
ARL17A_chr17_46547756_46584691	0/0	g0001	6	0	2	4	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0002	6	4	0	1	1	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0003	4	0	2	2	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0004	4	1	0	0	2	1	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0005	3	3	0	0	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0006	3	3	0	0	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0007	3	0	1	0	0	2	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0008	2	2	0	0	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0009	2	0	1	0	0	1	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0010	2	0	1	0	1	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0011	2	0	0	2	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0012	2	0	0	2	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0013	2	1	0	0	0	1	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0014	2	0	0	0	1	1	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0015	1	1	0	0	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0016	1	1	0	0	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0017	1	1	0	0	0	0	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	g0018	1	1	0	0	0	0	ARL17A	chr17	46547756	46584691