JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARL1_chr12_101388116_101412772	0/0	g0129	1	1	0	0	0	0	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	g0130	1	0	0	1	0	0	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	g0131	1	0	0	1	0	0	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	g0132	1	0	0	1	0	0	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	g0133	1	1	0	0	0	0	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	g0134	1	0	0	1	0	0	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	g0135	1	0	0	1	0	0	ARL1	chr12	101388116	101412772
ARL2BP_chr16_57240259_57258635	1/0	g0001	124	29	20	51	5	18	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0002	62	2	16	36	6	2	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0003	42	0	1	34	0	7	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0004	32	10	14	7	0	1	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0005	12	12	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0006	9	1	2	6	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0007	6	0	0	2	4	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0008	5	2	0	3	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0009	4	3	1	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/1	g0010	4	1	0	0	1	1	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0011	3	3	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0012	3	0	0	3	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0013	3	0	2	0	1	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0014	3	1	1	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0015	3	3	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0016	3	3	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0017	3	3	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0018	3	0	0	3	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0019	2	0	0	2	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0020	2	0	0	2	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0021	2	2	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0022	2	2	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0023	2	1	1	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0024	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0025	1	1	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0026	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0027	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0028	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0029	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0030	1	0	1	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0031	1	1	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0032	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0033	1	0	1	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0034	1	0	0	0	0	1	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0035	1	1	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0036	1	1	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0037	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0038	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0039	1	0	1	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0040	1	1	0	0	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0041	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0042	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	g0043	1	0	0	1	0	0	ARL2BP	chr16	57240259	57258635