JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARL4C_chr2_234488041_234502081	0/0	g0004	46	2	15	26	1	2	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0005	18	18	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0006	13	12	1	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0007	9	1	7	0	0	1	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0008	8	7	0	0	0	1	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0009	8	6	1	0	1	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0010	5	0	3	0	2	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0011	4	0	0	4	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0012	4	1	1	0	0	2	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0013	4	0	1	3	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0014	3	3	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0015	3	2	1	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0016	3	3	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0017	3	2	1	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0018	2	2	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0019	2	2	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0020	2	0	0	2	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0021	1	0	1	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0022	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0023	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0024	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0025	1	0	1	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0026	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0027	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0028	1	1	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0029	1	1	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0030	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0031	1	1	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0032	1	0	0	0	0	1	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0033	1	1	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0034	1	1	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0035	1	1	0	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0036	1	0	0	0	0	1	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0037	1	0	0	0	0	1	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0038	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0039	1	0	0	0	1	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0040	1	0	0	0	0	1	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0041	1	0	1	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0042	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0043	1	0	0	0	0	1	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0044	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0045	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0046	1	0	1	0	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0047	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	g0048	1	0	0	1	0	0	ARL4C	chr2	234488041	234502081
ARL4D_chr17_43393993_43406137	0/0	g0001	118	51	13	46	0	8	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/1	g0002	88	8	21	42	4	12	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	g0003	85	0	13	58	3	11	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	1/0	g0004	77	12	13	34	5	12	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	g0005	28	10	12	3	1	2	ARL4D	chr17	43393993	43406137