JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARL5A_chr2_151793797_151833421	0/0	g0242	1	0	0	0	1	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0243	1	0	0	0	0	1	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0244	1	1	0	0	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0245	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0246	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0247	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0248	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0249	1	1	0	0	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0250	1	1	0	0	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0251	1	0	1	0	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0252	1	0	1	0	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0253	1	0	1	0	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0254	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0255	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0256	1	1	0	0	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0257	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0258	1	1	0	0	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0259	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0260	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	g0261	1	0	0	1	0	0	ARL5A	chr2	151793797	151833421
ARL5B_chr10_18654431_18686639	0/1	g0001	24	2	1	18	0	2	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0002	20	0	2	14	1	3	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0003	16	0	10	0	2	4	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	1/0	g0004	15	1	11	0	1	1	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0005	13	0	2	10	0	1	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0006	11	0	8	0	2	1	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0007	10	5	3	1	1	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0008	9	9	0	0	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0009	8	0	0	8	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0010	7	7	0	0	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0011	7	0	3	4	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0012	6	1	1	2	0	2	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0013	6	0	0	6	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0014	5	0	0	5	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0015	5	0	0	3	0	2	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0016	5	0	0	5	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0017	4	0	0	3	0	1	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0018	4	0	1	2	0	1	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0019	4	0	0	3	0	1	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0020	4	0	0	4	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0021	4	0	3	0	0	1	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0022	4	0	0	4	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0023	3	3	0	0	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0024	3	0	0	3	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0025	3	0	0	1	0	2	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0026	3	0	0	2	1	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0027	3	3	0	0	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0028	3	0	3	0	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0029	3	3	0	0	0	0	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	g0030	3	0	0	3	0	0	ARL5B	chr10	18654431	18686639