JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARL6IP1_chr16_18786669_18806549	0/0	g0064	1	0	1	0	0	0	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	g0065	1	0	0	0	1	0	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	g0066	1	0	1	0	0	0	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	g0067	1	0	1	0	0	0	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	g0068	1	1	0	0	0	0	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	g0069	1	0	1	0	0	0	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	g0070	1	0	0	1	0	0	ARL6IP1	chr16	18786669	18806549
ARL6IP4_chr12_122975681_122987909	1/1	g0001	161	59	20	58	3	19	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0002	122	2	25	67	7	21	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0003	27	0	8	19	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0004	17	16	1	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0005	4	4	0	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0006	4	1	1	2	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0007	3	3	0	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0008	3	0	0	3	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0009	3	0	2	1	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0010	2	0	0	2	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0011	1	1	0	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0012	1	0	1	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0013	1	0	0	1	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0014	1	0	1	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0015	1	1	0	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0016	1	1	0	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0017	1	1	0	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0018	1	0	1	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0019	1	1	0	0	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	g0020	1	0	0	1	0	0	ARL6IP4	chr12	122975681	122987909
ARL6IP5_chr3_69079937_69111092	0/0	g0001	19	1	2	13	0	3	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0002	8	0	6	0	1	1	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0003	7	0	0	7	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0004	6	6	0	0	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0005	6	0	2	4	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0006	5	0	0	5	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0007	5	0	0	4	0	1	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0008	5	0	1	4	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0009	5	0	2	3	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0010	5	1	1	2	0	1	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0011	5	3	0	1	1	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0012	4	0	1	3	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0013	4	0	0	4	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	1/0	g0014	4	0	0	0	2	1	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0015	4	3	1	0	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0016	4	0	1	0	0	3	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0017	4	0	0	4	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0018	4	0	0	4	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0019	3	0	0	3	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0020	3	0	0	3	0	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0021	3	0	2	0	0	1	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0022	3	0	2	0	1	0	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	g0023	3	0	3	0	0	0	ARL6IP5	chr3	69079937	69111092