JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARMC3_chr10_22923053_23043523	0/0	g0281	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0282	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0283	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0284	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0285	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0286	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0287	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0288	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0289	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0290	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0291	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0292	1	0	1	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0293	1	0	1	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0294	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0295	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0296	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC3_chr10_22923053_23043523	0/0	g0297	1	1	0	0	0	0	ARMC3	chr10	22923053	23043523
ARMC5_chr16_31454501_31472165	0/1	g0001	109	4	24	68	6	6	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0002	73	17	9	32	1	14	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0003	66	11	9	27	5	14	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	1/0	g0004	27	0	4	17	3	2	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0005	26	10	0	9	0	7	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0006	15	11	1	2	0	1	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0007	12	12	0	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0008	9	1	3	5	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0009	7	0	3	2	2	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0010	6	3	0	3	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0011	5	0	1	4	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0012	5	2	1	2	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0013	4	4	0	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0014	4	4	0	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0015	4	1	2	0	1	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0016	3	0	3	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0017	3	0	0	3	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0018	3	3	0	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0019	3	3	0	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0020	3	0	0	0	0	3	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0021	2	0	0	2	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0022	2	0	0	2	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0023	2	2	0	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0024	2	2	0	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0025	1	0	0	1	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0026	1	0	0	1	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0027	1	0	1	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0028	1	0	0	1	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0029	1	0	0	1	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0030	1	0	0	1	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0031	1	1	0	0	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0032	1	0	0	1	0	0	ARMC5	chr16	31454501	31472165
ARMC5_chr16_31454501_31472165	0/0	g0033	1	0	0	1	0	0	ARMC5	chr16	31454501	31472165