JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARMC6_chr19_19028603_19063176	0/0	g0237	1	0	0	1	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0238	1	0	0	0	0	1	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0239	1	0	0	0	0	1	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0240	1	0	0	1	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0241	1	0	1	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0242	1	0	1	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0243	1	0	1	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0244	1	0	0	1	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0245	1	0	0	1	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0246	1	0	0	1	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0247	1	0	0	1	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0248	1	0	0	0	1	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0249	1	1	0	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0250	1	0	1	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0251	1	0	1	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0252	1	1	0	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0253	1	1	0	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0254	1	1	0	0	0	0	ARMC6	chr19	19028603	19063176
ARMC6_chr19_19028603_19063176	0/0	g0255	1	0	0	1	0	0	ARMC6	chr19	19028603	19063176
ARMC7_chr17_75104969_75135272	0/0	g0001	13	4	2	4	2	1	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0002	13	0	1	12	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0003	9	0	0	9	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0004	8	0	5	0	2	1	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0005	5	5	0	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0006	5	0	0	1	1	3	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0007	4	1	2	0	1	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0008	4	1	1	0	0	2	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0009	4	0	4	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0010	3	3	0	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0011	3	3	0	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0012	3	0	0	3	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0013	3	0	0	3	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0014	3	0	3	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0015	3	0	1	2	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0016	3	0	0	3	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0017	3	0	0	3	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0018	3	3	0	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0019	3	0	0	2	0	1	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0020	3	0	0	2	0	1	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0021	3	3	0	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0022	2	0	1	0	1	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0023	2	0	0	0	1	1	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0024	2	0	1	0	0	1	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0025	2	0	0	0	0	2	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0026	2	0	0	0	1	1	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0027	2	0	2	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0028	2	2	0	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0029	2	0	0	2	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0030	2	2	0	0	0	0	ARMC7	chr17	75104969	75135272
ARMC7_chr17_75104969_75135272	0/0	g0031	2	0	0	2	0	0	ARMC7	chr17	75104969	75135272