JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARMC9_chr2_231193631_231381848	0/0	g0187	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0188	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0189	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0190	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0191	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0192	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0193	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0194	1	0	0	0	0	1	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0195	1	0	1	0	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0196	1	0	1	0	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0197	1	0	1	0	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0198	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0199	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMC9_chr2_231193631_231381848	0/0	g0200	1	0	0	1	0	0	ARMC9	chr2	231193631	231381848
ARMCX1_chrX_101545547_101559700	0/0	g0001	140	26	21	72	7	14	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0002	45	9	15	17	1	3	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	1/1	g0003	39	7	3	18	2	7	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0004	29	3	6	17	2	1	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0005	8	8	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0006	8	8	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0007	5	5	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0008	4	1	0	2	1	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0009	3	3	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0010	3	0	0	1	0	2	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0011	2	0	1	1	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0012	1	0	1	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0013	1	0	1	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0014	1	0	0	0	0	1	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0015	1	0	0	1	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0016	1	0	0	0	0	1	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0017	1	1	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0018	1	1	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0019	1	0	0	0	0	1	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0020	1	1	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0021	1	0	0	0	0	1	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0022	1	0	0	1	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0023	1	0	1	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0024	1	1	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0025	1	0	0	0	0	1	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0026	1	1	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX1_chrX_101545547_101559700	0/0	g0027	1	1	0	0	0	0	ARMCX1	chrX	101545547	101559700
ARMCX2_chrX_101650281_101664850	0/0	g0001	145	18	26	83	3	15	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0002	51	7	8	30	1	5	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0003	30	0	6	16	6	2	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0004	26	15	3	1	2	5	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/1	g0005	13	5	2	2	0	3	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0006	8	8	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0007	8	0	3	5	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0008	6	1	4	0	1	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	1/0	g0009	5	4	0	0	0	0	ARMCX2	chrX	101650281	101664850