JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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Ascending / Descending.

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Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARMCX2_chrX_101650281_101664850	0/0	g0010	3	0	0	3	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0011	2	2	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0012	2	2	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0013	2	2	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0014	2	2	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0015	2	1	1	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0016	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0017	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0018	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0019	1	0	1	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0020	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0021	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0022	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0023	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0024	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0025	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0026	1	0	1	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0027	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0028	1	0	1	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0029	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0030	1	0	0	0	0	1	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0031	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0032	1	0	1	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0033	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0034	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0035	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0036	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0037	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0038	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0039	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0040	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0041	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0042	1	0	0	0	0	1	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0043	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0044	1	1	0	0	0	0	ARMCX2	chrX	101650281	101664850
ARMCX2_chrX_101650281_101664850	0/0	g0045	1	0	0	1	0	0	ARMCX2	chrX	101650281	101664850
ARMCX3_chrX_101618151_101632843	1/1	g0001	291	71	49	132	13	24	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	g0002	2	1	1	0	0	0	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	g0003	1	0	0	1	0	0	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	g0004	1	0	1	0	0	0	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	g0005	1	1	0	0	0	0	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	g0006	1	0	0	1	0	0	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	g0007	1	0	0	1	0	0	ARMCX3	chrX	101618151	101632843
ARMCX3_chrX_101618151_101632843	0/0	g0008	1	1	0	0	0	0	ARMCX3	chrX	101618151	101632843
ARMCX4_chrX_101480456_101500807	1/0	g0001	119	23	17	67	3	8	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/1	g0002	105	11	19	55	5	14	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0003	15	0	8	7	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0004	13	7	2	3	0	1	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0005	11	11	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0006	7	5	2	0	0	0	ARMCX4	chrX	101480456	101500807