JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ARMCX4_chrX_101480456_101500807	0/0	g0007	6	1	1	3	0	1	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0008	4	0	0	4	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0009	4	4	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0010	4	3	0	0	0	1	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0011	3	3	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0012	3	0	1	0	2	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0013	3	0	0	0	1	2	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0014	2	2	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0015	2	2	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0016	2	0	0	2	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0017	2	0	0	0	0	2	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0018	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0019	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0020	1	0	0	0	0	1	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0021	1	0	0	0	0	1	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0022	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0023	1	0	1	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0024	1	0	1	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0025	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0026	1	1	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0027	1	0	1	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0028	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0029	1	1	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0030	1	1	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0031	1	1	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0032	1	1	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0033	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0034	1	0	0	0	0	1	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0035	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0036	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0037	1	0	0	1	0	0	ARMCX4	chrX	101480456	101500807
ARMCX4_chrX_101480456_101500807	0/0	g0038	1	1	0	0	0	0	ARMCX4	chrX	101480456	101500807
ARMCX5_chrX_102594515_102609159	0/1	g0001	243	59	45	101	12	25	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0002	39	3	0	30	1	5	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0003	13	3	1	9	0	0	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0004	9	9	0	0	0	0	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0005	2	0	0	2	0	0	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0006	1	0	0	1	0	0	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0007	1	0	0	0	0	1	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0008	1	0	0	1	0	0	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	1/0	g0009	1	0	0	0	0	0	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0010	1	0	1	0	0	0	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0011	1	0	0	0	0	1	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0012	1	0	0	0	0	1	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0013	1	0	0	0	0	1	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0014	1	1	0	0	0	0	ARMCX5	chrX	102594515	102609159
ARMCX5_chrX_102594515_102609159	0/0	g0015	1	1	0	0	0	0	ARMCX5	chrX	102594515	102609159
ARMCX6_chrX_101610125_101623000	1/1	g0001	59	19	9	17	4	8	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	g0002	12	1	3	6	0	2	ARMCX6	chrX	101610125	101623000
ARMCX6_chrX_101610125_101623000	0/0	g0003	10	10	0	0	0	0	ARMCX6	chrX	101610125	101623000